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Pythiomics API 

Seamless Queries. Seamless Computation. 

Get programmatic access to Pythiomics — our trusted, well-curated multi-omics database — directly from your native environment.

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Access, Query, and Compute with Confidence

The Pythiomics API is a software package that provides programmatic access to Pythiomics, our well-curated and standardized multi-omics database of more than 10,000 datasets. It enables retrieving and quering the database directly from native bioinformatics environments such as Jupyter Notebook and RStudio - and receiving results in various formats, including text-based matrix files, XML, or JSON.

Programmatically Explore
10,000+ Multi-omics Datasets

Explore a standardized and reliable data source of comprehensive multi-omics data meticulously curated, harmonized and QC'ed.

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Bulk RNA

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Visium HD & Xenium

Coming soon

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Single-cell RNA

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Metabolomics

Coming soon

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Proteomics

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ATAC-Seq & CITE-Seq

Coming soon

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Visium Spatial

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CHIP-Seq

Coming soon

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CosMx

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Mutation & GWAS

Coming soon

Tailor-made for Computational Biologists and Bioinformaticians 

Whether you're building custom workflows or running large-scale analyses, Pythiomics API puts trusted omics data at your fingertips — ready to explore, compute, and publish.

Flexible Access. Flexible Analytics.

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Pythiomics API request form

Start making discoveries, today.

Request a trial of Pythiomics API

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